Update release workflows to link with libdeflate by andrewdavidsmith · Pull Request #276 · smithlabcode/dnmtools

.github/workflows/dnmtools_release_linux.yml: cloning and building libdeflate in the release workflow so htslib can link against it

andrewdavidsmith

committed

configure.ac: adding commented out line that turns on libdeflate for htslib when uncommented

andrewdavidsmith

committed

.github/workflows/dnmtools_release_linux.yml: adding line that turns on libdeflate in configure.ac before autoreconf in linux release workflow

andrewdavidsmith

committed

Update dnmtools_release_linux.yml

andrewdavidsmith

authored

src/analysis/nanopore.cpp: removing some using statements

andrewdavidsmith

committed

.github/workflows/dnmtools_release_linux.yml: adding forgotten modification to configure.ac in submodule abismal in release build workflow

andrewdavidsmith

committed

configure.ac: adding option to turn on libdeflate in the configure script

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml and .github/workflows/dnmtools_release_linux.yml: using --with-libdeflate to turn on libdeflate for release workflow builds

andrewdavidsmith

committed

src/abismal: updating submodule

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: adding forgotten install for libdeflate

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: adding sudo to install libdeflate in /opt/dnmtools

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: fixing LDADD to LDFLAGS and adding CPPFLAGS for building htslib with libdeflate

andrewdavidsmith

committed

.github/workflows/dnmtools_release_macos.yml: not install cmake with brew because it's already there

andrewdavidsmith

committed

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Update release workflows to link with libdeflate#276

Update release workflows to link with libdeflate#276
andrewdavidsmith merged 13 commits into
masterfrom
linking-with-libdeflate

Commits on Jun 17, 2025

.github/workflows/dnmtools_release_linux.yml: cloning and building libdeflate in the release workflow so htslib can link against it

configure.ac: adding commented out line that turns on libdeflate for htslib when uncommented

.github/workflows/dnmtools_release_linux.yml: adding line that turns on libdeflate in configure.ac before autoreconf in linux release workflow

Update dnmtools_release_linux.yml

src/analysis/nanopore.cpp: removing some using statements

.github/workflows/dnmtools_release_linux.yml: adding forgotten modification to configure.ac in submodule abismal in release build workflow

configure.ac: adding option to turn on libdeflate in the configure script

.github/workflows/dnmtools_release_macos.yml and .github/workflows/dnmtools_release_linux.yml: using --with-libdeflate to turn on libdeflate for release workflow builds

src/abismal: updating submodule

.github/workflows/dnmtools_release_macos.yml: adding forgotten install for libdeflate

.github/workflows/dnmtools_release_macos.yml: adding sudo to install libdeflate in /opt/dnmtools

.github/workflows/dnmtools_release_macos.yml: fixing LDADD to LDFLAGS and adding CPPFLAGS for building htslib with libdeflate

.github/workflows/dnmtools_release_macos.yml: not install cmake with brew because it's already there