Search results

RNAReadPhaseResolver: raw read co-occurrence without Isovar assembly

Status: Open.

#354 In openvax/varcode;

· iskandr opened on Apr 22, 2026

[#271 stage 3d] SequenceDiffEffectAnnotator: classify effects from protein diff

Status: Open.

#309 In openvax/varcode;

· iskandr opened on Apr 15, 2026

[#271 stage 3 planning] SequenceDiffAnnotator design, naming, and reordered staging

Status: Open.

#304 In openvax/varcode;

· iskandr opened on Apr 15, 2026

Unified MultiOutcomeEffect / OutcomeSet generalization across splice, readthrough, germline, and RNA evidence

Status: Open.

#299 In openvax/varcode;

· iskandr opened on Apr 14, 2026

Boundary-codon reconstruction for exon skip protein math

Status: Open.

#298 In openvax/varcode;

· iskandr opened on Apr 14, 2026

ML-based splice prediction for variants outside canonical splice windows

Status: Open.

#297 In openvax/varcode;

· iskandr opened on Apr 14, 2026

Genomic FASTA ingestion for intron retention and cryptic splice protein computation

Status: Open.

#296 In openvax/varcode;

· iskandr opened on Apr 14, 2026

Foundational refactor: MutantTranscript abstraction

Status: Open.

#271 In openvax/varcode;

· iskandr opened on Apr 12, 2026

Personal genome / haplotype-aware effect prediction (umbrella)

Status: Open.

#270 In openvax/varcode;

· iskandr opened on Apr 12, 2026

Phasing: cis/trans-aware effect prediction for nearby variants

Status: Open.

#269 In openvax/varcode;

· iskandr opened on Apr 12, 2026

Germline-aware effect prediction (umbrella)

Status: Open.

#268 In openvax/varcode;

· iskandr opened on Apr 12, 2026

Support VCF symbolic alleles and breakends as extended variant types

Status: Open.

#264 In openvax/varcode;

· iskandr opened on Apr 12, 2026