Modernize pyproject config, add format.sh, align with mhcgnomes#61
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Modernize pyproject config, add format.sh, align with mhcgnomes#61
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…conventions - pyproject.toml: add [build-system], bump requires-python to >=3.9, expand classifiers, add [tool.ruff] base (py39, line-length 100), expand ruff lint rules (W/I/B/C4/UP/SIM/RUF in addition to E/F), add [tool.pytest.ini_options] and [tool.coverage.*], add [project.optional-dependencies].dev - add format.sh running ruff format - lint.sh now also runs ruff format --check - remove legacy pylintrc and .travis.yml - add AGENTS.md (derived from mhcgnomes, adapted for gtfparse) - apply safe auto-fixes surfaced by new ruleset (isort, __all__ sort, dict/set literals, raise ... from err, iterable unpacking) - apply ruff format across codebase - bump version 2.6.2 -> 2.6.3
Coverage Report for CI Build 24740421170Coverage remained the same at 86.471%Details
Uncovered ChangesNo uncovered changes found. Coverage RegressionsNo coverage regressions found. Coverage Stats
💛 - Coveralls |
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Summary
pyproject.toml: add[build-system], bumprequires-pythonto>=3.9(matches CI matrix and dep floor), add[tool.ruff]base (target-version = "py39",line-length = 100), expand ruff lint rules (W,I,B,C4,UP,SIM,RUFalongside existingE/F), and add[tool.pytest.ini_options],[tool.coverage.*], plus adevextras group.format.sh(runsruff format) and updatelint.shto also runruff format --check— now symmetric with the siblingmhcgnomesrepo.AGENTS.mdderived from mhcgnomes, adapted for this repo (scripts, master branch, polars/pyarrow/pandas deps).pylintrcand.travis.yml(GitHub Actions in.github/workflows/tests.ymlis authoritative).__all__sorted,dict(...)→{...}literal,set([...])→{...},raise X→raise X from err,[a] + b→[a, *b],.keys()drop.ruff formatacross the codebase (whitespace/quote normalization, no logic changes).2.6.2→2.6.3.Pre-existing issues kept out of scope (ignored in
[tool.ruff.lint].ignore):UP031(%-format strings),B006(mutable default args),E741. Worth separate PRs.Test plan
./format.sh— clean./lint.sh—ruff check+ruff format --checkboth pass./test.sh— 20/20 tests pass, coverage 86%