Bump version to 2.6.0 for numpy 2.x release#59
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The pyarrow and polars pins were already updated on master (pyarrow>=18.0.0, polars>=0.20.2) but never released. This version bump enables a PyPI release with numpy 2.x compatibility.
setup-python@v3 pip cache is returning 400 errors from GitHub's cache service. Update to v4/v5 and remove pip caching to fix CI.
Newer polars versions parse empty/blank lines in GTF files as rows with all-null values. Filter these out early by dropping rows where seqname is null.
Pull Request Test Coverage Report for Build 23935155351Details
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Summary
The pyarrow (
>=18.0.0) and polars (>=0.20.2) pin updates were already merged to master but never released to PyPI. This version bump enables a release that supports numpy 2.x.Motivation
Part of a coordinated numpy 2.x update across the openvax ecosystem. pyensembl depends on gtfparse, and the current PyPI release (2.5.0) pins
pyarrow<14.1.0, which is incompatible with numpy 2.x.Test plan