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Pull requests: nf-core/modules

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Pull requests list

Centrifuger centrifuger
#11181 opened Apr 14, 2026 by haris18s Contributor Loading…
10 of 13 tasks
1
fix(bam_stringtie_merge): collect per-sample GTFs before merge
#11180 opened Apr 14, 2026 by pinin4fjords Member Loading…
3 tasks
Update dependency prettier to v3.8.2 size/xs
#11175 opened Apr 14, 2026 by renovate bot Loading…
2 tasks
Update dotnet monorepo size/xs
#11174 opened Apr 14, 2026 by renovate bot Loading…
2 tasks
Update KAIJU_MKFMI to also emit another taxonomy file required downstream
#11172 opened Apr 14, 2026 by jfy133 Member • Draft
17 tasks
2
canvas_germline
#11164 opened Apr 13, 2026 by ktruve Loading…
1 task done
26
seqkit: switch to sample2 subcommand size/xs
#11145 opened Apr 10, 2026 by bounlu Contributor Loading…
17 tasks
2
Fix tximport gene-level crash with mismatched transcript FASTA/GTF size/m size/s
#11141 opened Apr 9, 2026 by pinin4fjords Member Loading…
3 tasks done
1
2
Whatshap/phase: add pedigree input
#11128 opened Apr 7, 2026 by tetedange13 Contributor • Draft
8 of 9 tasks
4
Eklipse topics migration
#11125 opened Apr 6, 2026 by EfraMP Member Loading…
8 of 17 tasks
15
Make lineages_topology output optional in FREYJA_UPDATE
#11124 opened Apr 6, 2026 by sam-baird Loading…
12 of 17 tasks
3
Add module: dorado/basecaller
#11122 opened Apr 6, 2026 by sahuno Loading…
9 of 11 tasks
18
Add module: modkit/localize
#11120 opened Apr 5, 2026 by sahuno Loading…
3 tasks done
1
Add poppunk/createdb module
#11118 opened Apr 2, 2026 by cwoodside1278 Contributor Loading…
@cwoodside1278
6
Add circlator/all module
#11116 opened Apr 2, 2026 by cwoodside1278 Contributor Loading…
11 of 14 tasks
1
@cwoodside1278
8
add methurator gtestimator and plot modules
#11110 opened Apr 1, 2026 by edogiuili Loading…
9 of 17 tasks
60
new module: vcfpartition Ready for Review
#11098 opened Mar 31, 2026 by camlloyd Member Loading…
11 of 17 tasks
1
11
add dds/createproject new module Adding a new module
#11094 opened Mar 31, 2026 by annaasklof • Draft
17 tasks
1
@mashehu
1
feat: civicpy/annotate module new module Adding a new module
#11079 opened Mar 27, 2026 by emmcauley Contributor • Draft
5 of 17 tasks
1
12
add batch testing
#11071 opened Mar 27, 2026 by mashehu Contributor Loading…
Update cellranger multi module to comply to nf-core guidelines
#11066 opened Mar 27, 2026 by mahesh-panchal Member • Draft
2 of 17 tasks
tabix/tabix: update module to support region-based VCF extraction
#11064 opened Mar 27, 2026 by luisas Contributor Loading…
12 of 17 tasks
22
Add snpclustering subworkflow
#11059 opened Mar 26, 2026 by dbaku42 Loading…
3 tasks done
22
New modules: Llamacpp-python/run and huggingface/download for allowing to run simple text workloads with local LLMs new module Adding a new module Ready for Review
#11053 opened Mar 26, 2026 by toniher Member Loading…
13 of 17 tasks
68
Bump CuteSV version
#11052 opened Mar 26, 2026 by awgymer Contributor Loading…
17 tasks
3
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