Refresh tutorial notebook outputs against DataJoint 2.2.2#171
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dimitri-yatsenko merged 1 commit intoMay 19, 2026
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All 23 tutorial and how-to notebooks have been re-executed against the current released DataJoint version (2.2.2). The committed cell outputs were stale: 21 notebooks still showed "DataJoint 2.1.1 connected" in their connection banner, and blob-detection additionally rendered a spurious TqdmWarning and a scikit-image dataset download line. Built on top of #170 (which added ipywidgets to the executor image and pre-cached the scikit-image datasets), so the regenerated outputs are free of the previous noise: - No "TqdmWarning: IProgress not found" stderr blocks. - No "Downloading file 'data/mitosis.tif' from gitlab.com ..." stdout. - All connection banners read "DataJoint 2.2.2 connected to ...". scripts/check_notebook_versions.py now exits 0.
MilagrosMarin
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May 19, 2026
dimitri-yatsenko
merged commit a1a2ca0
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docs/notebook-output-hygiene
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Summary
Refreshes the committed cell outputs of all 23 tutorial / how-to notebooks by re-executing them against DataJoint 2.2.2 with the new executor image from #170.
DataJoint 2.1.1 connectedin their connection banner; all now readDataJoint 2.2.2 connected.blob-detection.ipynbno longer renders theTqdmWarning: IProgress not foundblock or the scikit-imageDownloading file 'data/mitosis.tif' from gitlab.com ...line.Stacked on #170 — the cleanliness of these outputs depends on the
ipywidgetsdependency + scikit-image pre-cache added there. Merge #170 first; this PR will then retargetmainautomatically.Test plan
git diff --stat docs/notebook-output-hygiene..shows only*.ipynbfiles undersrc/tutorials/andsrc/how-to/— no source-code changes.python scripts/check_notebook_versions.pyexits 0.grep -rln 'TqdmWarning\|IProgress not found' src/→ empty.grep -rln 'Downloading file.*scikit-image' src/→ empty.MODE=LIVE docker compose upand visit/tutorials/examples/blob-detection/. Cell 6 has no yellow warning, cell 2 banner reads 2.2.2, cell 16 progress bar is a single widget instead of six text snapshots.tutorials/basics/01-first-pipeline/,tutorials/advanced/json-type/) and confirm the only meaningful diff is the version banner.