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Abdennur Lab

Lab for Genomic Data Science

18 followers
https://abdenlab.org

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oxbow oxbow Public

Oxbow makes genomic data ready for high-performance analytics.

Rust 153 15
jointly-hic jointly-hic Public

Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matrices into the same vector space

Python 8 1
grandscatter grandscatter Public

Interactive multi-dimensional scatter viewer

TypeScript 5
cfdb cfdb Public

A cross-consortium CFDE metadata aggregator.

Python 2

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Showing 10 of 24 repositories

oxbow Public
Oxbow makes genomic data ready for high-performance analytics.

abdenlab/oxbow’s past year of commit activity

Rust 153 Apache-2.0 15 3 0 Updated May 7, 2026
cfdb Public
A cross-consortium CFDE metadata aggregator.

abdenlab/cfdb’s past year of commit activity

Python 2 0 6 3 Updated May 4, 2026
giql Public
SQL dialect for genomic range operations

abdenlab/giql’s past year of commit activity

Python 9 2 12 4 Updated Apr 30, 2026
Understand-Anything Public Forked from Lum1104/Understand-Anything
Claude Code skills that turn any codebase into an interactive knowledge graph you can explore, search, and ask questions about (Multi-platform e.g., Codex are supported).

abdenlab/Understand-Anything’s past year of commit activity

TypeScript 0 MIT 1,263 0 0 Updated Apr 8, 2026
epifolio-notebooks Public

abdenlab/epifolio-notebooks’s past year of commit activity

Python 0 0 0 0 Updated Mar 31, 2026
grandscatter Public
Interactive multi-dimensional scatter viewer

abdenlab/grandscatter’s past year of commit activity

TypeScript 5 MIT 0 0 0 Updated Mar 27, 2026
eigen-tour Public

abdenlab/eigen-tour’s past year of commit activity

JavaScript 1 MIT 1 0 1 Updated Feb 4, 2026
jointly-hic Public
Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matrices into the same vector space

abdenlab/jointly-hic’s past year of commit activity

Python 8 GPL-3.0 1 1 0 Updated Dec 29, 2025
oxbow-lite Public

abdenlab/oxbow-lite’s past year of commit activity

Jupyter Notebook 0 0 0 0 Updated Jul 13, 2025
tcga-nmf Public
TCGA ATAC-seq NMF notebook

abdenlab/tcga-nmf’s past year of commit activity

Python 1 0 0 0 Updated Jun 18, 2025

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