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refactor: Phases 6-7 — shared library modules + verb-first CLI#830

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Mar 28, 2026
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refactor: Phases 6-7 — shared library modules + verb-first CLI#830
aRustyDev merged 20 commits into
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pr/1-phases-6-7

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@aRustyDev aRustyDev commented Mar 28, 2026

Summary

  • Phase 6: Extract shared library modules — component type registry (9→12 types), file-io.ts (Result-wrapped I/O), config.ts (TOML config with precedence)
  • Phase 7: Verb-first command decomposition — extract catalog.ts (1324 lines), create 8 verb command modules (add, remove, list, search, info, init, lint, update), backward-compat aliases
  • Follow-ups: Fix lint delegation, add process.exit(EXIT.OK), disambiguate Component interface, add EntityType↔ComponentType bridge, decompose plugin.ts, add valibot config validation

Test plan

  • bun test --cwd packages/cli — zero regressions from baseline
  • Verb-first commands resolve: agents add skill, agents search mcp-server
  • Backward-compat aliases work: agents skill add shows deprecation warning

🤖 Generated with Claude Code

aRustyDev and others added 20 commits March 24, 2026 03:24
@aRustyDev @claude
docs: establish test baseline — 1580 pass, 92 fail (ai-qr6)
ee45918 
Pre-restructure snapshot for regression tracking.
92 failures categorized: hash API (26), skill lifecycle (12),
catalog/search (11), plugin ops (9), git ops (9), other (25).
Success criterion: zero regressions, not zero failures.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
chore: remove build/ directory and gitignore it (ai-bx3)
a13f19c 
Remove: build/ (7 .gitkeep files across claude, claude-code, cortex, gemini, vscode, zed)
Add: build/ to .gitignore to prevent re-tracking

Note: crew/, polecats/, witness/, mayor/, refinery/, models/ were already absent
from this repo (never tracked or previously removed). models/ was already gitignored.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
refactor: rename context/ -> content/ + update all config (ai-37e)
ac2cf02 
Atomic commit: directory rename + all references updated.
- .pre-commit-config.yaml (34 patterns)
- .claude/devrag.json (7 patterns)
- .claude-plugin/marketplace.json (6 plugin sources)
- .github/pre-commit/cspell.json, biome.json
- .github/workflows/plugin-validation.yml
- justfile (38 references + 5 module paths)
- CLAUDE.md, README.md
- ~10 catalog path hardcodes in skill.ts
- 38 TypeScript source files (lib/ + commands/)
- 29 TypeScript test files (test expectations)
- 6 rule markdown files
- 10 plugin JSON config files (sources, schemas, hooks)
- 99 content markdown files (commands, plugins, agents)
- 31 plan/docs markdown files
- entityIdFromPath test expectations updated (context_ -> content_)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
feat: root Bun workspace + justfile + conflict resolution (ai-4rf)
d65f08b 
Phase 4: Root workspace configuration
- Create root package.json with Bun workspaces: ["packages/*"]
- Move bun.lock to root
- Update 24 cli/ → packages/cli/ refs in justfile
- Update .claude/settings.json hooks paths
- Resolve 3 merge conflicts from parallel Phase 2/3 cherry-picks
  (catalog.ts, taxonomy.ts, skill.ts: use Phase 2 depth + Phase 3 rename)
- bun install from root works, tests pass

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
chore: Phase 5 verification — fix deps, clean worktrees, update docs …
b6c240f 
…(ai-c8x)

- Add picomatch dependency (was missing from package.json)
- Clean up orphaned worktrees
- Update CLAUDE.md paths: cli/ → packages/cli/src/, .scripts/ → packages/cli/src/
- Update memory files
- Fix settings.local.json stale cli/ refs

Verification results:
- Tests: 1550 pass / 81 fail (improved from 1580/92 baseline — no regressions)
- CLI: bun run packages/cli/src/bin/agents.ts works
- Stale paths: 0 components/, 0 .scripts/, minimal cli/ in non-critical files
- Workspace: bun install from root resolves all deps

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
chore: add .worktrees/ to .gitignore
328883c 
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
refactor: reconcile component type registry — 9 to 12 types (ai-miw)
2e73ce7 
Expand COMPONENT_TYPES from 9 to 12 entries with kebab-case naming:
- Remove: claude_md (not a component type)
- Rename: mcp_server → mcp-server, output_style → output-style
- Add placeholders: persona, lsp, mcp-client, mcp-tool

Add ComponentTypeMetadata interface and COMPONENT_TYPE_META registry
with discovery patterns, provider mappings, and placeholder flags.
Add helper functions: getComponentMeta, getActiveTypes, parseComponentType.

Update all 20 source/test files across providers, commands, registry,
KG system, SQL, and Python embedding CLI. Zero new test failures.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
fix: correct KG/CLI naming boundary — SQL uses EntityType, docs use C…
8c01c22 
…omponentType

Revert coverage-analysis.sql and semantic-search.sql to use KG underscore
format (mcp_server) instead of CLI hyphen format (mcp-server). Update
README.md entity types column to use CLI ComponentType format. Fix test
description strings and add clarifying comment to schema.sql.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
fix: enforce EntityType/ComponentType boundary and wire helpers
1a5a599 
C1+C2: Revert EntityType (KG/database layer) back to underscore format
(output_style, mcp_server) — distinct from ComponentType's kebab-case.
Fix embed.py ENTITY_PATTERNS keys and guess_entity_type return values.
Fix kg.ts and kg-commands.test.ts to match underscore EntityType keys.

I1: Replace hardcoded type arrays in component.ts with getActiveTypes()
and parseComponentType(), enabling flexible user input (underscore,
mixed case) and auto-including all non-placeholder types.

I2: Mark hook as placeholder: true (no providers yet) for consistency.

Test results: 1547 pass / 100 fail / 5 errors (baseline +1 pass).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
feat: add shared file-io and config library modules (ai-geo)
2b9cac7 
Extract two reusable library modules for the CLI package:

- file-io.ts: Unified file I/O with Result error handling (read, write,
  copy, remove, directory ops, existence checks, symlink re-exports)
- config.ts: TOML-based layered configuration with precedence chain
  (defaults -> user config -> project config -> env vars)

Adds smol-toml dependency and 57 new tests (zero regressions).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
chore: remove unused join import from file-io.ts
09f073e 
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
fix: improve config/file-io code quality — deep copy, snake_case TOML…
ddcf6f2 
…, parse warnings

- Deep copy DEFAULT_CONFIG in loadConfig to prevent shared nested references
- Add camelCase<->snake_case key transformation for TOML files (snake_case
  in TOML, camelCase in TypeScript)
- Warn on console.error when config file parsing fails instead of silently
  swallowing errors
- Remove dead withFileTypes parameter from listDirectory signature
- Update config tests for snake_case TOML convention with new coverage

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
feat: Phase 6 — shared library modules + component type registry (ai-…
e47eac1 
…g97)

- Reconcile component types: 9→12 (rename mcp_server→mcp-server,
  output_style→output-style, add persona/lsp/mcp-client/mcp-tool
  placeholders, remove claude_md from ComponentType)
- Add ComponentTypeMetadata registry with discovery patterns, providers
- Add helper functions: getComponentMeta, getActiveTypes, parseComponentType
- Create file-io.ts: unified Result-wrapped file I/O operations
- Create config.ts: TOML-based layered CLI config with precedence chain
- 59 new tests, zero regressions (1606 pass / 100 fail baseline)

Closes: ai-miw, ai-geo, ai-g97

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
refactor: extract catalog.ts from skill.ts (~1300 lines)
51ef44f 
Move the entire catalog subcommand tree (9 commands: analyze, summary,
forks, cleanup, errors, scrub, stale, backfill, discover) to a dedicated
commands/catalog.ts module. The catalog is a named exception to the
verb-first grammar and is now accessible as both `agents catalog <sub>`
(top-level) and `agents skill catalog <sub>` (backward-compat lazy import).

- skill.ts: 2193 → 893 lines, catalog-only imports removed
- catalog.ts: 1324 lines, self-contained with own constants
- agents.ts: top-level catalog route added
- Zero test regressions (1606 pass / 100 fail / 5 errors — baseline)

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
feat: add 8 verb-first command modules for unified CLI grammar
2414cbb 
Create add, remove, list, search, info, init, lint, update command
modules under packages/cli/src/commands/. Each accepts component type
as first positional arg and routes through ComponentManager. Includes
51 structural tests verifying command definitions.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
refactor: wire verb modules into CLI entrypoint + remove old skill.ts…
8465555 
… verb code

Add 8 verb-first commands (add, remove, list, search, info, init, lint,
update) as top-level lazy imports in agents.ts. Remove the corresponding
subcommand definitions and verb-only imports from skill.ts, reducing it
from 893 to 508 lines. Update skill-cli-wiring and verb-commands tests
to reflect the new structure.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
feat: add backward-compat aliases for noun-first skill commands
8eda205 
Old noun-first commands (e.g. "agents skill add foo") now proxy to the
new verb-first modules with a deprecation warning on stderr. This
preserves backward compatibility during the verb-first migration.

- Add compat.ts helper: nounAlias() and deprecatedCommand() factories
- Wire 9 aliases into skill.ts: add, init, list, search, info, update,
  remove, find, outdated
- Each alias injects the component type and delegates to the verb module
- find/outdated use deprecatedCommand for skill-specific lib functions
- Update skill-cli-wiring test to expect aliases instead of undefined
- Add 15 structural tests for the compat aliases

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
feat: Phase 7 — verb-first command decomposition (ai-7ch)
80468d4 
- Extract catalog.ts (1324 lines) from skill.ts as standalone command
- Create 8 verb-first command modules: add, remove, list, search,
  info, init, lint, update — all route through ComponentManager
- Wire verb modules into agents.ts as top-level commands
- Reduce skill.ts from 2193 to 621 lines
- Add backward-compat aliases via compat.ts factory — old noun-first
  commands (agents skill add) still work with deprecation warnings
- 63 new tests, zero regressions

CLI grammar now supports:
  agents add skill foo          (verb-first, preferred)
  agents skill add foo          (noun-first, deprecated)
  agents catalog analyze        (pipeline exception)

Closes: ai-nhj, ai-9ld, ai-t23, ai-7ch

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
fix: Phase 7 code review follow-ups (items 1-3, 7-9)
b341397 
- lint.ts: delegate to CClint for skill type instead of stub
- All verb modules: add process.exit(EXIT.OK) on success paths
- remove.ts: drop --yes flag (ComponentProvider.remove lacks support)
- update.ts: require explicit type arg instead of defaulting to skill
- compat.ts: replace `as typeof args` with `as any` + explanatory comment
- catalog.ts: replace all inline require() with ES imports

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
@aRustyDev @claude
fix: Phase 7 follow-up — lint delegation, exit codes, cleanup
3fef661 
- lint.ts: delegate to CClint for skill type instead of stub
- All verb modules: add process.exit(EXIT.OK) on success paths
- remove.ts: remove unused --yes flag (prompts not yet implemented)
- update.ts: require explicit type instead of defaulting to skill
- compat.ts: document type assertion rationale
- catalog.ts: replace 15 require() calls with ES imports

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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socket-security Bot commented Mar 28, 2026

Review the following changes in direct dependencies. Learn more about Socket for GitHub.

Diff Package Supply Chain
Security		 Vulnerability Quality Maintenance License
Addedsmol-toml@​1.6.110010010090100
Addedplaywright@​1.58.210010010099100

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@aRustyDev aRustyDev merged commit 786857e into main Mar 28, 2026
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@aRustyDev aRustyDev deleted the pr/1-phases-6-7 branch March 28, 2026 02:31
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