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@SynBioDex

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology
README.md

Synthetic Biology Data Exchange Group

A group to coordinate the development of standards to facilitate data exchange in synthetic biology

As well as several software projects, this organization includes respositories containing information about the SBOL/SBOL Visual standards and their development.

SbolStandardWebsite is the repo from which http://www.sbolstandard.org/ is generated.

A summary of recent activity on the specification (rather than software) repos within the SynBioDex organization is generated by SynBioDex/activity-summaries and accessible at: https://synbiodex.github.io/activity-summaries/

SBOL

  • SBOL-specification: the SBOL Standard
  • SEPs: SBOL Enhancement Proposals - proposals for changes to the SBOL standard

SBOL Visual

SBOL and SBOL Visual

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  1. SBOL-specification SBOL-specification Public

    The Synthetic Biology Open Language (SBOL)

    TeX 23 9

  2. SBOL-visual SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    HTML 37 18

  3. pySBOL3 pySBOL3 Public

    Native python implementation of SBOL 3.0 specification

    Python 43 19

  4. sboljs3 sboljs3 Public

    A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js

    TypeScript 6 1

  5. SBOL-utilities SBOL-utilities Public

    Command-line utilities and scripts for manipulating SBOL data

    JavaScript 19 29

  6. SBOL-examples SBOL-examples Public

    A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.

    Jupyter Notebook 3 4

Repositories

Showing 10 of 59 repositories
  • Excel-to-SBOL Public
    SynBioDex/Excel-to-SBOL’s past year of commit activity
    Python 4 BSD-3-Clause 8 31 1 Updated Apr 23, 2026
  • SBOLCanvas Public
    SynBioDex/SBOLCanvas’s past year of commit activity
    TypeScript 15 Apache-2.0 7 28 4 Updated Apr 21, 2026
  • sbol-owl3 Public Forked from dissys/sbol-owl3

    The ontology for the SBOL v3 specification

    SynBioDex/sbol-owl3’s past year of commit activity
    Python 1 Apache-2.0 2 4 0 Updated Apr 20, 2026
  • libSBOLj3 Public Forked from goksel/libSBOLj3_moved_to_SynBioDex

    A Java library for the Synthetic Biology Open Language version 3

    SynBioDex/libSBOLj3’s past year of commit activity
    Java 2 Apache-2.0 3 5 0 Updated Apr 16, 2026
  • Excel-to-Flapjack Public
    SynBioDex/Excel-to-Flapjack’s past year of commit activity
    Jupyter Notebook 0 1 0 1 Updated Apr 13, 2026
  • SBOL-visual Public

    The reference implementation of the SBOL Visual standard

    SynBioDex/SBOL-visual’s past year of commit activity
    HTML 37 18 27 2 Updated Mar 31, 2026
  • SeqTrainer Public

    ML training on SBOL data

    SynBioDex/SeqTrainer’s past year of commit activity
    Jupyter Notebook 6 MIT 3 2 1 Updated Mar 24, 2026
  • SBOL-Converter Public

    SBOL Java Converter

    SynBioDex/SBOL-Converter’s past year of commit activity
    Java 2 Apache-2.0 0 9 1 Updated Mar 23, 2026
  • SBOL-Data-Curation Public
    SynBioDex/SBOL-Data-Curation’s past year of commit activity
    1 0 0 0 Updated Mar 18, 2026
  • SBOLTestSuite Public
    SynBioDex/SBOLTestSuite’s past year of commit activity
    Java 8 10 9 2 Updated Feb 26, 2026
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