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update abfe_analysis notebook#305

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atravitz wants to merge 1 commit intomainfrom
update_abfe_data
Open

update abfe_analysis notebook#305
atravitz wants to merge 1 commit intomainfrom
update_abfe_data

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@atravitz atravitz commented Apr 24, 2026

this updates the notebook to pull the new format of results data with multiple units and carry over some of the changes from openfe's gather to handle the changes.

We expect the CI to still fail on the septop analysis notebook.

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Colab 👈 Launch a Colab session on branch update_abfe_data

@@ -33,32 +33,24 @@
"name": "stdout",
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@atravitz atravitz Apr 24, 2026

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Line #1.    !curl -O https://zenodo.org/records/19498687/files/abfe_results.zip

this will overwrite old data instead of hanging and waiting for user input - I was having trouble reproducing the CI error because the stale data was still in my repo.


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@atravitz atravitz marked this pull request as ready for review April 24, 2026 18:49
@@ -33,32 +33,24 @@
"name": "stdout",
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@atravitz atravitz Apr 24, 2026

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we don't need to include this additional handling if we don't want to, but this allows users to get to parity with the CLI.


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@atravitz atravitz requested a review from IAlibay April 24, 2026 19:00
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