fix: small develop bugs (#709, #711, #712, #713)#714
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cailmdaley wants to merge 3 commits intodevelopfrom
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fix: small develop bugs (#709, #711, #712, #713)#714cailmdaley wants to merge 3 commits intodevelopfrom
cailmdaley wants to merge 3 commits intodevelopfrom
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7-space indent on the Params Default docstring opener caused IndentationError at the 8-space body, breaking canfar_monitor, canfar_submit_job, canfar_monitor_log, and canfar_run imports. Closes #709
summary_run previously consumed sys.argv[1] as the 'patch' positional without parsing, so 'summary_run -h' tried to create a directory named '-h'. Switch to argparse: help/usage work, required patch is enforced, optional job_exclusive and --verbose preserved. Closes #711
Three runtime deps were missing from the develop image, breaking
imports in recently-merged modules:
- astroquery: mask_package.mask, mask_runner
- numba: ngmix_package.ngmix, ngmix_runner
- fitsio: uncompress_fits_package.uncompress_fits,
uncompress_fits_runner
setuptools>=81 dropped pkg_resources, which sip_tpv v1.1 (the latest
release; upstream unmaintained) still imports at module load. That
breaks split_exp_package.split_exp and split_exp_runner on current
setuptools. Pinning setuptools<81 restores pkg_resources until
sip_tpv is either forked or replaced; the v2.0 Dockerfile uses the
same pin.
Closes #712
Closes #713
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Four of the five issues filed against
developwhile I was reviewing PRs this week. Issue #710 is still open pending a direction call (posted findings there).Changes
fix: align canfar_monitor docstring indentationsrc/shapepipe/canfar/canfar_monitor.pyfix: add argparse to summary_run so -h shows helpsrc/shapepipe/summary_run.pyfix: add astroquery, numba, fitsio, pin setuptools<81 in DockerfileDockerfileNotes
#713 turned out to be a transitive issue:
sip_tpvv1.1 (the latest release; upstream appears unmaintained) importspkg_resourcesat module load, whichsetuptools>=81no longer ships. Thesetuptools<81pin restores it. The v2.0 Dockerfile already uses the same pin.#711 swapped to argparse rather than a 2-line
-h/--helpguard sosummary_rungets real help output. Behavior is preserved:patchis still the required positional,job_exclusiveis still optional, and-v/--verbosereplaces the oldlen(args) == 3heuristic.#712 picks up
astroquery,numba,fitsiounpinned to match the pattern on v2.0's Dockerfile (core stack pinned, auxiliary tools floating). Happy to pin them if preferred — let me know.Closes #709, #711, #712, #713.