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Constantly Learning
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Addraed/README.md

👋 Hi, I’m Manu !

Typing SVG

I work at the intersection of biotechnology, data systems and software engineering, building tools that bridge scientific workflows with robust, production-ready code.
I enjoy creating automation pipelines, data workflows, interactive apps and secure systems, combining my background in Bioinformatics, Biology and IT.


🚀 What I Do

  • 🔐 Cybersecurity & Pentesting – forensic analysis, vulnerability assessment, server hardening, OWASP methodology, NIST/ISO 27001/ENS compliance.
  • 🧬 Bioinformatics & Data Science – ML pipelines (Python/R), genomic data analysis & visualization, unsupervised learning, scientific computing.
  • 💻 Automation & Development – Python apps, SQL/VBA automation, ETL pipelines, QA testing in critical production environments.

🧩 Highlighted Projects

Kali Linux Nmap Nikto Metasploit iptables NIST CVSS

  • Forensic analysis on a compromised Linux server: SSH root intrusion identified via logs, journals and command history
  • Detection and remediation of 10 critical vulnerabilities (SSH, FTP, MariaDB, Apache/WordPress)
  • Offensive pentesting with documented CVSS-scored findings
  • Server hardening: iptables, HTTP headers, insecure service removal
  • Full technical documentation: forensic report, pentesting report, BCP/DRP plan and executive presentation

Python R Shiny FP-Growth mlxtend plotly chorddiag

  • Full pipeline on multi-omic data from 331 cancer patients (TCGA-SKCM)

  • Unsupervised ML (FP-Growth): 965 frequent itemsets → 11 clinically relevant association rules

  • Interactive web app deployed on ShinyApps.io for non-technical healthcare professionals

  • Pattern recognition across genomic subtypes: BRAF, RAS and Triple WT

  • VBA Automation Modules – import mappers, dynamic range parsers and data pipelines for Excel ↔ Access.

  • DevOps / Network Exercises – ACL configs, automation scripts and small network labs.

(More projects coming — some currently private!)


🛠️ Tech Stack

My Skills

Languages
Python · R · SQL (Oracle/MySQL) · VBA · Bash · Java · JavaScript

Tools & Frameworks
Pandas · NumPy · Tkinter · FastAPI · Mutagen · ReportLab · Dataview/Obsidian · Access DAO · Git · Node.js

Cloud & Systems
Linux · Docker · GitHub Actions · Virtualization · Networking (Cisco/Packet Tracer)

Bioinformatics
Biopython · FASTA/FASTQ workflows · Alignment tools · Genomic data handling


📊 GitHub Stats & Languages

GitHub Stats

Top Langs

github contribution snake

📚 My Background

  • MSc Bioinformatics & Biostatistics
  • BSc Biology (Honors)

Professional experience in public-sector IT, automation and data processing.
I like solving problems that combine science, engineering and creativity — whether it’s a bioinformatics pipeline, a Python app or workflow automation.


📫 Find Me Here!

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  1. Melanoma-Data-Visualization-App Melanoma-Data-Visualization-App Public

    Melanoma subtype classifier: end-to-end Python pipeline (FP-Growth, pandas, NumPy) on TCGA-SKCM multi-omic data, served via FastAPI REST API, containerized with Docker, and deployed on Render. Inte…

    Jupyter Notebook

  2. cybersecurity-final-project cybersecurity-final-project Public

    A hands-on cybersecurity final project simulating a real-world server breach. Covers forensic analysis, penetration testing, vulnerability remediation, and incident response planning following NIST…

  3. MetaMusicExtract MetaMusicExtract Public

    A desktop tool for extracting and exporting music file metadata to Excel. Features folder scanning with recursive search, supports MP3, FLAC, M4A and OGG formats. Includes field selection, humanize…

    Python