I am trying to build a MICOM model using abundance data generated from Paprica, with preprocessing applied to match MICOM’s expected format. However, I am encountering the following warning when running MICOM:
Less than 50% of the abundance could be matched to the model database. Model community.py:229 sample_1105 may not be representative of the sample.
Additionally, when checking the manifest file, I noticed that none of my taxa were found in the MICOM model database, leading to a found_abundance_fraction of 0.0 for all samples.
Dataset Information
- The taxonomy and abundance values were generated using Paprica.
- Preprocessing was done to format it for MICOM.
- Here is an example of my dataset before processing:
The manifest file shows that no taxa were matched in MICOM:
Would appreciate any guidance on resolving this issue. Thanks!
I am trying to build a MICOM model using abundance data generated from Paprica, with preprocessing applied to match MICOM’s expected format. However, I am encountering the following warning when running MICOM:
Less than 50% of the abundance could be matched to the model database. Model community.py:229 sample_1105 may not be representative of the sample.Additionally, when checking the manifest file, I noticed that none of my taxa were found in the MICOM model database, leading to a found_abundance_fraction of 0.0 for all samples.
Dataset Information
The manifest file shows that no taxa were matched in MICOM:
Would appreciate any guidance on resolving this issue. Thanks!